PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01000014G0360
Organism
Phyllostachys heterocycla
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 359aa    MW: 39705.1 Da    PI: 4.5553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01000014G0360genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17110159255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++G+r ++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  PH01000014G0360 110 QFRGIRHRP-WGKWAAEIRDPRK---GVRVWLGTFSSAEEAARAYDAEARRIRG 159
                      69****888.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.1E-30110169IPR001471AP2/ERF domain
CDDcd000182.04E-30110168No hitNo description
SMARTSM003801.4E-34110173IPR001471AP2/ERF domain
PROSITE profilePS5103223.367110167IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-21110169IPR016177DNA-binding domain
PfamPF008471.5E-9111159IPR001471AP2/ERF domain
PRINTSPR003674.3E-10111122IPR001471AP2/ERF domain
PRINTSPR003674.3E-10133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCGGAILSNI IPTPRRVTDG HLWPEKKKPR GAGAGRRQLR RVPEEEGEED FEADFEEFEE  60
TGESEVELSD DEAKPFPALR SGFVRDGLNA TAAGVDGPAA RSAKRKRKNQ FRGIRHRPWG  120
KWAAEIRDPR KGVRVWLGTF SSAEEAARAY DAEARRIRGK KAKVNFPDEA LVESQNRRAE  180
PTFVNVPKFN TEEKPTIKLA VNNMANTNAY SYPVVDYTSH EPFVQTQNMS FVPAMNAVED  240
SFMNLSSDQG SNSFNCSDFS RENDTKTPDI TSVLSPIPTL TEVDESAFLQ NNASNAVAPP  300
VTGNAGVDLT DLEPYMKFLM DSGSDESIDT LLSCDGSQDV VSIMDLWSFD DMPMSAGLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-18109167160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-18109167463ATERF1
3gcc_A1e-18109167463ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0944870.0FP094487.1 Phyllostachys edulis cDNA clone: bphyem201g10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015643752.11e-180PREDICTED: ethylene-responsive transcription factor 1-like
SwissprotQ6K7E61e-134ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLA0A0E0A6771e-180A0A0E0A677_9ORYZ; Uncharacterized protein
STRINGBGIOSGA022463-PA1e-179(Oryza sativa Indica Group)
STRINGLOC_Os06g09390.11e-179(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.26e-41related to AP2 12